About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97342525_97346326_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97342525 - 97346326
Intron Length:
3802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
TCCTGAATATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTCCTGAATA
Flanking Amino Acid:
NKRFYHLANDKASGLSWMIV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.3
0.37
1
63.7
40.7
Minor 5ss
30.2
-2.3
3.5
37.5
41.7
Minor BPS
76.4
0.83
1.3
81.89
32.7

Associated Gene:

Gene:
FBXO15
Ensembl Gene ID:
ENSAPLG00000012462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024217
97340579 - 97364355
23777