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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97346048_97346326_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97346048 - 97346326
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGAATATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTCCTGAATA
Flanking Amino Acid:
GLPSRIKKAIKASGLSWMIV
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.3
0.37
1
63.7
40.7
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
76.4
0.83
1.3
81.89
32.7

Associated Gene:

Gene:
FBXO15
Ensembl Gene ID:
ENSAPLG00000012462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012985
97338479 - 97364355
25877