About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97348493_97350748_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
97348493 - 97350748

Intron Length:
2256

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAGAGTAA

5'SS Class:
major

3'SS Sequence:
ATTAACTTTTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTAAT

U12 Branch Point Sequence:
TCTACTTTAATT

Flanking Amino Acid:
DPGLLVGLWKGKNEIAFVMA

Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.5
0.51
1.1
65.2
37.1

Major BPS
87.2
0.92
0.9
87.6
25.6

Major PPT
78.5
0.64
0.9
74.2
40.4

Minor 5ss
34
-1.8
3.6
45.7
49.5

Minor BPS
75.6
0.88
1.2
84.21
37.1

Associated Gene:

Gene:
FBXO15

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

97340579 - 97364355
23777

97338479 - 97364355
25877