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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97443664_97445249_F

Intron Information:

Intron Rank:
136419
Intron Class:
major
Intron Phase:
Intron Coordinates:
97443664 - 97445249
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ATTACTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
75.9
34.8
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
42.1
-0.9
3.1
51.6
45.1
Minor BPS
65.8
0.58
1.7
84.15
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043146
97443569 - 97462421
18853
ENSAPLT00000025895
97442433 - 97445414
2982
ENSAPLT00000024706
97443579 - 97453054
9476