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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97445621_97461723_F

Intron Information:

Intron Rank:
136427
Intron Class:
major
Intron Phase:
Intron Coordinates:
97445621 - 97461723
Intron Length:
16103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
AAAGCTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
77.7
0.69
1
81
30.2
Major PPT
81.9
0.72
0.9
80.5
37
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
51.7
0.13
1.9
68.11
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043146
97443569 - 97462421
18853