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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97692539_97704248_F

Intron Information:

Intron Rank:
137310
Intron Class:
major
Intron Phase:
Intron Coordinates:
97692539 - 97704248
Intron Length:
11710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TCTTACCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTGATCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.6
0.78
0.8
81.3
30.3
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
57
0.3
1.7
71.66
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023948
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041271
97692484 - 97711326
18843