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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97704295_97710491_F

Intron Information:

Intron Rank:
137311
Intron Class:
major
Intron Phase:
Intron Coordinates:
97704295 - 97710491
Intron Length:
6197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.5
0.91
0.6
88.8
20.4
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
63.9
0.3
1.5
68.85
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023948
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041271
97692484 - 97711326
18843