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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97738978_97744692_F

Intron Information:

Intron Rank:
142274
Intron Class:
major
Intron Phase:
Intron Coordinates:
97738978 - 97744692
Intron Length:
5715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTTATTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.8
0.65
0.7
71.9
26.3
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
56.1
0.05
1.7
63.81
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026610
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031724
97738446 - 97745914
7469