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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9786561_9788820_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9786561 - 9788820
Intron Length:
2260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
CAGGGTAACATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GTATCTTTAAAG
Flanking Amino Acid:
VVEINYALQKSQALYFLCFF
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
48.9
-0
1
39.6
37.9
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
66.7
0.39
1.5
66.54
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014002
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014604
9786264 - 9797425
11162