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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9788965_9789745_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9788965 - 9789745
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATGC
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
CAATCTCAAACA
Flanking Amino Acid:
LKKQPEEGIQLIRSIQMPLG
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
61.4
38.3
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
82
0.72
0.8
80.7
31.3
Minor 5ss
44.4
-0.6
2.8
60
44.5
Minor BPS
47.2
-0.2
2
57.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014002
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014604
9786264 - 9797425
11162