Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97900771_97914093_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

97900771 - 97914093

Intron Length:

13323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTGCATCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TTTGTTTGCATC

Flanking Amino Acid:

WYIRAPPRSKIYLRFLDYEM

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

1.3

75.3

40.8

Major BPS

0.62

1.4

85.7

34.9

Major PPT

68.9

0.43

0.9

62.4

38.6

Minor 5ss

32.3

-2

2.8

43.1

43.7

Minor BPS

46.2

-0.3

1.9

61.75

38.7

Associated Gene:

Gene:

NETO1

Ensembl Gene ID:

ENSAPLG00000009839

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010239

97863676 - 97936672

72997

ENSAPLT00000010236

97863676 - 97932842

69167