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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97930520_97936615_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
97930520 - 97936615
Intron Length:
6096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CATGCATAAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.9
0.74
0.8
80.9
29.8
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
48.4
-0.1
2
61.38
44.5

Associated Gene:

Gene:
NETO1
Ensembl Gene ID:
ENSAPLG00000009839
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010239
97863676 - 97936672
72997