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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9793522_9793698_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9793522 - 9793698
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTCAGACAT
5'SS Class:
weak_major
3'SS Sequence:
TCCTCATTTAGAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCATCCTCATTT
Flanking Amino Acid:
GHIMELAGDWFLKTSERRVR
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.4
0.15
1.4
57.3
41.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
60
0.23
1.7
68.2
36.5
Minor 5ss
31.6
-2.1
3.2
46.3
42.8
Minor BPS
56
0.27
1.8
72.99
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014002
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014604
9786264 - 9797425
11162