About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9793890_9795373_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9793890 - 9795373
Intron Length:
1484

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
AATGGCTGTCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TATTTCTGCACT
Flanking Amino Acid:
VLPEYLKVFKLTYLFPFFFF
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.2
25.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
50.4
0.01
1.2
45.7
45.3
Minor 5ss
28.5
-2.5
3.9
43.8
43.9
Minor BPS
59.9
0.39
1.9
81.77
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014002
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014604
9786264 - 9797425
11162