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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9795548_9796010_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9795548 - 9796010
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
GTTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTGTTTTTATTT
Flanking Amino Acid:
DEETEKESISMFNDVLSVND
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
64.6
41.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
85.7
33.4
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014002
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014604
9786264 - 9797425
11162