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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9796127_9797220_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9796127 - 9797220
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TACTTAAATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATACTTAAAT
Flanking Amino Acid:
AYEYTAPTNIAKLMLTIRRC
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
65.9
0.36
1
60.5
39.3
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
72.9
0.8
1.6
87.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014002
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014604
9786264 - 9797425
11162