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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97973209_97973410_F

Intron Information:

Intron Rank:
133909
Intron Class:
major
Intron Phase:
Intron Coordinates:
97973209 - 97973410
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
GTTTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
AATATATCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
70.2
0.5
1
72.1
33
Major PPT
79.3
0.66
1
72.9
42.2
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
48.6
-0.1
1.8
61.52
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021982
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040540
97972296 - 97974117
1822