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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9805721_9808874_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9805721 - 9808874
Intron Length:
3154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
GTGCACAAAATA
Flanking Amino Acid:
SSSVHSKVREMLSYFHKQSK
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
83.1
0.75
1
84.6
36
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
42.2
-0.6
2
51.65
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029622
9805260 - 9822039
16780