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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9808962_9809445_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9808962 - 9809445
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACTG
5'SS Class:
major
3'SS Sequence:
GTTTTTACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTGTGTTAACA
Flanking Amino Acid:
WKKVSGEALKILEHNCIQDF
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
60.9
43.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.7
0.67
0.8
75.1
34.6
Minor 5ss
41.7
-0.9
3.1
56.6
47.5
Minor BPS
55.9
0.18
2.2
71.26
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029622
9805260 - 9822039
16780