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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9809516_9810348_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9809516 - 9810348
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TATGTTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCCCATATGT
Flanking Amino Acid:
TVKNQLQFFPRSLMEYISEV
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.2
0.52
1
67.4
42.5
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
49.9
0.08
2.2
78.59
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029622
9805260 - 9822039
16780