Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9815243_9816064_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9815243 - 9816064

Intron Length:

822

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGTGAA

5'SS Class:

major

3'SS Sequence:

TTTCCTCTGTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

ACCACTATAACA

Flanking Amino Acid:

LRKSLNKAATGADVVRLWNL

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

70.6

35.2

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

80.7

0.69

0.9

Minor 5ss

38.6

-1.3

3.1

48.8

47.3

Minor BPS

0.03

1.7

59.09

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029622

9805260 - 9822039

16780