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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9816821_9817822_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9816821 - 9817822
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAATA
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
GTTTCCTCGACA
Flanking Amino Acid:
CMDVDIVPEMKQTVAVIQGV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
73.5
37.2
Major BPS
62
0.3
1
62.3
30.4
Major PPT
86.6
0.82
0.7
84.6
30.4
Minor 5ss
42.7
-0.8
3
54.9
43.5
Minor BPS
71.6
0.67
1.5
80.06
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029622
9805260 - 9822039
16780