About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_98208505_98225911_R

Intron Information:

Intron Rank:
135042
Intron Class:
major
Intron Phase:
Intron Coordinates:
98208505 - 98225911
Intron Length:
17407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
GAATTTGTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
ATGTTCTGACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
60.1
0.23
1.2
56.6
47.4
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
49.7
-0
1.7
60.8
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024834
98182733 - 98226096
43364