Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_98244427_98245989_R

Intron Information:

Intron Rank:

152333

Intron Class:

major

Intron Phase:

Intron Coordinates:

98244427 - 98245989

Intron Length:

1563

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGGACT

5'SS Class:

major

3'SS Sequence:

TTGCTATTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

TTTTTCCAAAGA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

0.9

73.9

36.1

Major BPS

80.4

0.76

80.3

31.8

Major PPT

82.6

0.73

0.9

76.6

36.5

Minor 5ss

35.5

-1.6

3.1

Minor BPS

48.9

-0

2.2

71.21

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042218

98244271 - 98247257

2987