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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_98246054_98247028_R

Intron Information:

Intron Rank:
152334
Intron Class:
major
Intron Phase:
Intron Coordinates:
98246054 - 98247028
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTTATTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
42.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.9
-1.1
2.9
49
41.5
Minor BPS
48.4
-0
1.9
71.33
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029561
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042218
98244271 - 98247257
2987