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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_98340823_98356588_F

Intron Information:

Intron Rank:
142181
Intron Class:
major
Intron Phase:
Intron Coordinates:
98340823 - 98356588
Intron Length:
15766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026567
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031335
98340527 - 98359120
18594