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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9838906_9840185_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9838906 - 9840185
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGATGT
5'SS Class:
major
3'SS Sequence:
TTTTTCACCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGCTTTTTCACC
Flanking Amino Acid:
ELRQRLRQLENGTTLGQSPL
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
67.9
38
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.9
0.74
0.8
77.8
29.5
Minor 5ss
47.5
-0.2
2.8
64.7
40.9
Minor BPS
56.3
0.18
1.7
65.82
40.4

Associated Gene:

Gene:
ESYT2
Ensembl Gene ID:
ENSAPLG00000014371
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029157
9835185 - 9912282
77098
ENSAPLT00000015032
9833780 - 9912282
78503
ENSAPLT00000039424
9833780 - 9912282
78503