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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_98697389_98706518_R

Intron Information:

Intron Rank:
134839
Intron Class:
major
Intron Phase:
Intron Coordinates:
98697389 - 98706518
Intron Length:
9130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AAATGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
AGAGAGTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
54
0.1
1
59.7
32.6
Major PPT
73.4
0.53
1
66.2
44.1
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
40.8
-0.7
2.2
49.62
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042816
98697174 - 98713656
16483