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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_98710362_98713596_R

Intron Information:

Intron Rank:
134841
Intron Class:
major
Intron Phase:
Intron Coordinates:
98710362 - 98713596
Intron Length:
3235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.7
0.69
0.8
73.8
36.2
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
60
0.29
1.8
72.95
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042816
98697174 - 98713656
16483