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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_98778399_98785720_R

Intron Information:

Intron Rank:
133587
Intron Class:
major
Intron Phase:
Intron Coordinates:
98778399 - 98785720
Intron Length:
7322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.4
37.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.6
0.91
0.7
88.8
26.8
Minor 5ss
38.3
-1.3
3
51.1
45.2
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019139
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023600
98778219 - 98830864
52646