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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_98785922_98830541_R

Intron Information:

Intron Rank:
133588
Intron Class:
major
Intron Phase:
Intron Coordinates:
98785922 - 98830541
Intron Length:
44620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGCATCTCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
77.3
0.62
1
73.5
41.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
46.6
-0.2
1.8
56.56
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019139
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023600
98778219 - 98830864
52646