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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99137813_99138002_F

Intron Information:

Intron Rank:
1
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
99137813 - 99138002
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACGGCT
5'SS Class:
major
3'SS Sequence:
TGGGGGCGGGCAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
GTAATCTTAACT
Flanking Amino Acid:
MELAALVRKLGHELAEIRER
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
62
41.7
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
48.2
-0.1
1.2
38.8
44.6
Minor 5ss
37
-1.5
3.6
48
47.6
Minor BPS
73.8
0.82
1.2
82.46
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009263
99137782 - 99163529
25748