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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99138956_99140251_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
99138956 - 99140251
Intron Length:
1296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAGATCAA
5'SS Class:
weak_major
3'SS Sequence:
TCCACCTCAAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTACCCTTTATT
Flanking Amino Acid:
RDYQAQSQSSELFTGYFCQD
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.3
0.15
1.1
52.5
40.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
48.1
-0.1
1.7
54.1
35.2
Minor 5ss
33.7
-1.9
3.3
45.1
44.2
Minor BPS
67.7
0.64
1.6
82.62
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009263
99137782 - 99163529
25748