Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99142439_99143707_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99142439 - 99143707

Intron Length:

1269

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGTAA

5'SS Class:

major

3'SS Sequence:

AATGCATTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTGTTTTTGATG

Flanking Amino Acid:

TDRHILSSNESSLRSSNQSL

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

65.4

36.8

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

68.1

0.41

63.6

42.1

Minor 5ss

34.3

-1.8

3.5

46.3

Minor BPS

63.1

0.27

1.3

64.84

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008843

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009263

99137782 - 99163529

25748