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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99159317_99160454_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99159317 - 99160454
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTGTTTTACTT
Flanking Amino Acid:
CSFMTEVHKKGEKNFPELLE
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
76.5
33.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
89.3
0.88
0.7
81.3
36
Minor 5ss
34.6
-1.8
3.2
47.3
48.3
Minor BPS
59.5
0.38
1.7
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009263
99137782 - 99163529
25748