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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_992002_1051268_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
992002 - 1051268
Intron Length:
59267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCATCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TTAACCTCATTT
Flanking Amino Acid:
CSVLSSVYALVDADDVITKE
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
68.3
0.41
0.9
60.9
35
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
53.5
0.19
1.8
74.22
42.5

Associated Gene:

Gene:
PTH1R
Ensembl Gene ID:
ENSAPLG00000005598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005825
991927 - 1103775
111849