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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9920954_9923278_F

Intron Information:

Intron Rank:
145461
Intron Class:
major
Intron Phase:
Intron Coordinates:
9920954 - 9923278
Intron Length:
2325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTTA
5'SS Class:
major
3'SS Sequence:
ATTTGTACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.9
34.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.1
0.61
0.9
67.6
43
Minor 5ss
43.4
-0.7
2.8
50
46.3
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028419
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021876
9918817 - 9924275
5459
ENSAPLT00000019460
9918746 - 9924275
5530