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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9925279_9925995_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9925279 - 9925995
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAGTTTT
5'SS Class:
major
3'SS Sequence:
ACTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TATCCTATAAAA
Flanking Amino Acid:
ENERKKHDLRNSDYKKEEEN
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
79.9
36
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
85.8
0.81
0.8
79.9
31.4
Minor 5ss
42.1
-0.9
2.8
52
44.6
Minor BPS
55.3
0.16
1.7
68.79
36.6

Associated Gene:

Gene:
WDR60
Ensembl Gene ID:
ENSAPLG00000014988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015690
9924934 - 9948990
24057