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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9926061_9927714_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9926061 - 9927714
Intron Length:
1654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTATCT
Flanking Amino Acid:
QKEKTSHQYVRTAKDKGKIS
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.8
0.67
0.8
77.7
29.7
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
63.6
0.5
1.9
86.38
39.1

Associated Gene:

Gene:
WDR60
Ensembl Gene ID:
ENSAPLG00000014988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015690
9924934 - 9948990
24057