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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9927773_9931024_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9927773 - 9931024
Intron Length:
3252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTACTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GTTTCATTTATT
Flanking Amino Acid:
EKERRDTRQEEIKDTHIYKS
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
80.7
0.69
0.8
79.2
34
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
61.7
0.45
1.9
82.28
38.7

Associated Gene:

Gene:
WDR60
Ensembl Gene ID:
ENSAPLG00000014988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015690
9924934 - 9948990
24057