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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99281383_99323851_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99281383 - 99323851
Intron Length:
42469

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACACATCC
Flanking Amino Acid:
NSVGEIYSLQGHGLGSAKVS
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.7
84.1
34
Major BPS
72.7
0.56
1
75
30.1
Major PPT
79.7
0.67
0.7
73.5
24.7
Minor 5ss
33.5
-1.9
4
49
47.2
Minor BPS
41.1
-0.7
2.1
54.46
42.8

Associated Gene:

Gene:
DOK6
Ensembl Gene ID:
ENSAPLG00000008778
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009126
99281243 - 99522016
240774