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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99323970_99347275_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99323970 - 99347275
Intron Length:
23306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGTCC
5'SS Class:
major
3'SS Sequence:
ACTTCTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTCCCTTATGT
Flanking Amino Acid:
LMMEMEQKARLQTSLSEPMT
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.5
39
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
82.8
0.74
0.7
81.2
30
Minor 5ss
37.6
-1.4
3.2
43.1
44.2
Minor BPS
64.7
0.54
1.9
85.49
40.8

Associated Gene:

Gene:
DOK6
Ensembl Gene ID:
ENSAPLG00000008778
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009126
99281243 - 99522016
240774