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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99371560_99379783_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99371560 - 99379783
Intron Length:
8224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TATGCCTTATTC
Flanking Amino Acid:
LAAGVQREQNERFNVYLMPT
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
62.7
0.38
1.7
71.3
40.4

Associated Gene:

Gene:
DOK6
Ensembl Gene ID:
ENSAPLG00000008778
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009126
99281243 - 99522016
240774