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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99379904_99405241_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99379904 - 99405241
Intron Length:
25338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTAACATTAATA
Flanking Amino Acid:
ETSKTFACESELEAEEWCKH
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
65.5
0.48
1.6
74.67
36.3

Associated Gene:

Gene:
DOK6
Ensembl Gene ID:
ENSAPLG00000008778
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009126
99281243 - 99522016
240774