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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9939510_9942215_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9939510 - 9942215
Intron Length:
2706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
TTCTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTACTTTTAATT
Flanking Amino Acid:
WTFRVPTFSTDGVLNSVNHT
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
79.1
34.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.2
0.88
0.7
85.1
28
Minor 5ss
36.8
-1.5
2.7
44.7
36.8
Minor BPS
71.5
0.75
1.1
81.64
33.7

Associated Gene:

Gene:
WDR60
Ensembl Gene ID:
ENSAPLG00000014988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015690
9924934 - 9948990
24057