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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99405357_99424191_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99405357 - 99424191
Intron Length:
18835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
KAAYFRNFHKVTELHNIKNI
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
1
79.6
31.5
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
DOK6
Ensembl Gene ID:
ENSAPLG00000008778
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009126
99281243 - 99522016
240774