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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9944388_9945724_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9944388 - 9945724
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATACAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCAATTTAAAT
Flanking Amino Acid:
VDLSGSQTDLGLIPGGKVKL
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.5
0.42
1
64.4
41.1
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
57.8
0.32
1.7
74.95
41.5

Associated Gene:

Gene:
WDR60
Ensembl Gene ID:
ENSAPLG00000014988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015690
9924934 - 9948990
24057