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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9945786_9946039_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9945786 - 9946039
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTCCTTTTACC
Flanking Amino Acid:
VHSSTMELNSSLFPKDVRLR
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
74.2
0.6
1
67
39.4
Major PPT
77.2
0.61
0.8
72.9
36.9
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
69.6
0.6
1.6
80.33
34.2

Associated Gene:

Gene:
WDR60
Ensembl Gene ID:
ENSAPLG00000014988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015690
9924934 - 9948990
24057