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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9947694_9948818_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9947694 - 9948818
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTCTTTTGATT
Flanking Amino Acid:
PVVKQTIPSEKVVTMALLGE
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.5
28.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.2
0.77
0.8
81.4
34.9
Minor 5ss
32.3
-2
2.6
35.1
34.3
Minor BPS
62.7
0.48
1.2
75.19
36.2

Associated Gene:

Gene:
WDR60
Ensembl Gene ID:
ENSAPLG00000014988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015690
9924934 - 9948990
24057