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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_99541877_99541976_F

Intron Information:

Intron Rank:
129082
Intron Class:
minor
Intron Phase:
Intron Coordinates:
99541877 - 99541976
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AGAAAATTTTCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTCTCCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.3
55.3
44.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
62.3
0.28
1.1
55.7
47.8
Minor 5ss
96.7
1.57
0.7
90.9
28.7
Minor BPS
76.8
0.7
1.4
76.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034840
99541371 - 99543814
2444